SEED Subsystem: L-rhamnose utilization in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) No genes
Alfa-L-rhamnosidase (EC 3.2.1.40) No genes
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) GFF409
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) GFF1852
L-rhamnose isomerase (EC 5.3.1.14) GFF2264
L-rhamnose isomerase (EC 5.3.1.14) GFF2264
L-rhamnose mutarotase GFF2261
L-rhamnose operon regulatory protein RhaS GFF2266
L-rhamnose operon transcriptional activator RhaR GFF2267
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter GFF2268
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) GFF2262
Lactaldehyde reductase (EC 1.1.1.77) GFF4855
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF No genes
Predicted L-rhamnose ABC transporter, ATP-binding component No genes
Predicted L-rhamnose ABC transporter, substrate-binding component No genes
Predicted L-rhamnose ABC transporter, transmembrane component 1 No genes
Predicted L-rhamnose ABC transporter, transmembrane component 2 No genes
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase No genes
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC GFF2273
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB GFF2274
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA GFF2275
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT No genes
Rhamnogalacturonides degradation protein RhiN GFF1658
Rhamnulokinase (EC 2.7.1.5) GFF2265
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) GFF2263
Transcriptional regulator of rhamnose utilization, AraC family No genes
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase No genes

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