SEED Subsystem: DNA Repair Base Excision in Klebsiella pneumoniae MRSN742743

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) KFA93_RS05665 ligA;go_function=DNA
DNA polymerase I (EC 2.7.7.7) KFA93_RS17405 xni;go_function=DNA
  KFA93_RS22455 polA;go_function=nucleic
DNA polymerase II (EC 2.7.7.7) KFA93_RS11270 polB;go_function=DNA
DNA-3-methyladenine glycosylase (EC 3.2.2.20) KFA93_RS09505 tag;inference=COORDINATES
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) KFA93_RS06875 alkA;go_function=catalytic
Endonuclease III (EC 4.2.99.18) KFA93_RS13995 nth;go_function=DNA-(apurinic
Endonuclease VIII KFA93_RS01940 nei;go_function=oxidized
Exodeoxyribonuclease I (EC 3.1.11.1) KFA93_RS07145 sbcB;go_function=3'-5'-RNA
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) KFA93_RS09150 mutM;go_function=nucleic
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) KFA93_RS18200 recJ;go_function=5'-3
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 KFA93_RS04665 ung;go_function=uracil

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