SEED Subsystem: TCA Cycle in Escherichia coli BW25113

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) b0726 sucA
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) b0617 citD
Citrate synthase (si) (EC 2.3.3.1) b0720 gltA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) b0727 sucB
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) b1612 fumA
Fumarate hydratase class II (EC 4.2.1.2) b1611 fumC
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) b1136 icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) b0801 ybiC
  b3236 mdh
Malate:quinone oxidoreductase (EC 1.1.5.4) b2210 mqo
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) b0723 sdhA
  b4154 frdA
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) b0724 sdhB
  b4153 frdB
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) b0729 sucD
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) b0728 sucC
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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