SEED Subsystem: Oxidative stress in Escherichia coli BW25113

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein No genes
Catalase (EC 1.11.1.6) b3942 katG
  b1732 katE
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR b0683 fur
Ferroxidase (EC 1.16.3.1) b0812 dps
Fumarate and nitrate reduction regulatory protein b1334 fnr
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator b3961 oxyR
Iron-binding ferritin-like antioxidant protein b0812 dps
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) b3908 sodA
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR b4178 yjeB
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps b0812 dps
Organic hydroperoxide resistance protein No genes
Organic hydroperoxide resistance transcriptional regulator No genes
Paraquat-inducible protein A b0950 pqiA
  b1833 yebS
Paraquat-inducible protein B b0951 pqiB
  b0952 ymbA
  b1834 yebT
Peroxidase (EC 1.11.1.7) b3942 katG
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR b4063 soxR
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS b4062 soxS
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) b1646 sodC
Superoxide dismutase [Fe] (EC 1.15.1.1) b1656 sodB
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR b4046 yjbK
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family No genes
transcriptional regulator, Fur family No genes

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