SEED Subsystem: DNA Repair Base Excision in Escherichia coli BW25113

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) b2411 ligA
DNA polymerase I (EC 2.7.7.7) b2798 ygdG
  b3863 polA
DNA polymerase II (EC 2.7.7.7) b0060 polB
DNA-3-methyladenine glycosylase (EC 3.2.2.20) b3549 tag
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) b2068 alkA
Endonuclease III (EC 4.2.99.18) b1633 nth
Endonuclease VIII b0714 nei
Exodeoxyribonuclease I (EC 3.1.11.1) b2011 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) b3635 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) b2892 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 b2580 ung

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