SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Escherichia coli BW25113

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) b3526 kdgK
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) b2842 kduD
2-keto-3-deoxygluconate permease (KDG permease) b3909 kdgT
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) b2843 kduI
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) No genes
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) b1521 uxaB
Beta-glucuronidase (EC 3.2.1.31) b1617 uidA
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) b3128 garD
D-mannonate oxidoreductase (EC 1.1.1.57) b1542 ydfI
  b2172 yeiQ
  b4323 uxuB
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) b3719 yieL
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP b4321 gntP
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC b1615 uidC
Glucuronide transporter UidB b1616 uidB
Hexuronate transporter b3093 exuT
Hexuronate utilization operon transcriptional repressor ExuR b3094 exuR
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) b4322 uxuA
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) b0772 ybhC
Polygalacturonase (EC 3.2.1.15) No genes
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor b1827 kdgR
Transcriptional repressor UidR b1618 uidR
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) b3092 uxaC
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator b4324 uxuR
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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