SEED Subsystem: Polyamine Metabolism in Escherichia coli ECRC98

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) JDDGAC_04045 patD
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) JDDGAC_04065 potD
  JDDGAC_07095 potD
Agmatinase (EC 3.5.3.11) JDDGAC_22945 speB
Agmatine deiminase (EC 3.5.3.12) No genes
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) JDDGAC_16185 adiA
Arginine/agmatine antiporter JDDGAC_16195 adiC
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD JDDGAC_02270 ydgI
Biosynthetic arginine decarboxylase (EC 4.1.1.19) JDDGAC_22935 speA
Carbamate kinase (EC 2.7.2.2) JDDGAC_11495 arcC
  JDDGAC_12615 yahI
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) JDDGAC_10740 speF
  JDDGAC_22810 speC
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion JDDGAC_14055 yacC
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) JDDGAC_09595 potF
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) JDDGAC_04060 ydcT
  JDDGAC_06740 potA
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) JDDGAC_09590 potG
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) JDDGAC_09585 potH
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) JDDGAC_09580 potI
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE JDDGAC_10745 potE
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A JDDGAC_14065 speD
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) JDDGAC_02380 speG
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) JDDGAC_04055 potB
  JDDGAC_06745 potB
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) JDDGAC_04050 ydcV
  JDDGAC_07090 potC
Spermidine synthase (EC 2.5.1.16) JDDGAC_14060 speE
Transcriptional regulator of catabolic arginine decarboxylase (adiA) JDDGAC_11415 envY
  JDDGAC_16190 adiY
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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