SEED Subsystem: DNA Repair Base Excision in Escherichia coli ECRC98

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) JDDGAC_26165 ligA
DNA polymerase I (EC 2.7.7.7) JDDGAC_17775 polA
  JDDGAC_23835 xni
DNA polymerase II (EC 2.7.7.7) JDDGAC_14390 polB
DNA-3-methyladenine glycosylase (EC 3.2.2.20) JDDGAC_19670 tag
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) JDDGAC_28365 alkA
Endonuclease III (EC 4.2.99.18) JDDGAC_02115 nth
Endonuclease VIII JDDGAC_10645 nei
Exodeoxyribonuclease I (EC 3.1.11.1) JDDGAC_28675 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) JDDGAC_19260
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) JDDGAC_23220 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 JDDGAC_25005 ung

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Or view this subsystem at the SEED (slow)