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SEED Subsystem: DNA-replication in
Escherichia coli ECRC102
Experiments:
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Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
NIAGMN
_13305
recG
ATP-dependent DNA helicase RecQ
NIAGMN
_12115
recQ
NIAGMN
_14620
NIAGMN
_14625
NIAGMN
_14630
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
NIAGMN
_12765
dnaA
NIAGMN
_19595
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
NIAGMN
_01795
ruvC
DNA polymerase I (
EC 2.7.7.7
)
NIAGMN
_11905
polA
NIAGMN
_17940
xni
DNA polymerase II (
EC 2.7.7.7
)
NIAGMN
_08645
polB
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
NIAGMN
_07985
dnaE
DNA polymerase III beta subunit (
EC 2.7.7.7
)
NIAGMN
_12775
dnaN
DNA polymerase III chi subunit (
EC 2.7.7.7
)
NIAGMN
_09660
holC
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
NIAGMN
_24285
holB
DNA polymerase III delta subunit (
EC 2.7.7.7
)
NIAGMN
_05395
holA
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
NIAGMN
_07815
dnaQ
DNA polymerase III psi subunit (
EC 2.7.7.7
)
NIAGMN
_09145
holD
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
NIAGMN
_06220
dnaX
DNA polymerase III theta subunit (
EC 2.7.7.7
)
NIAGMN
_01665
holE
DNA primase (EC 2.7.7.-)
NIAGMN
_16425
dnaG
DNA primase (EC 2.7.7.-), phage-associated
NIAGMN
_24800
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
NIAGMN
_18915
recN
DNA replication protein DnaC
NIAGMN
_00190
dnaC
NIAGMN
_09195
dnaC
NIAGMN
_27100
DNA replication terminus site-binding protein
NIAGMN
_00420
tus
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
NIAGMN
_17825
recD
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
NIAGMN
_17820
recB
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
NIAGMN
_17810
recC
Helicase PriA essential for oriC/DnaA-independent DNA replication
NIAGMN
_11475
priA
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
NIAGMN
_01780
ruvA
Holliday junction DNA helicase RuvB
NIAGMN
_01775
ruvB
Primosomal protein I
NIAGMN
_00195
NIAGMN
_02805
NIAGMN
_09190
dnaT
NIAGMN
_22770
eCs1768
NIAGMN
_24445
eCs1768
NIAGMN
_27105
NIAGMN
_27480
eCs1768
NIAGMN
_28360
Primosomal replication protein N
NIAGMN
_09960
priB
Primosomal replication protein N prime prime
NIAGMN
_06235
priC
RecA protein
NIAGMN
_18475
recA
Recombination protein RecR
NIAGMN
_06210
recR
Replicative DNA helicase (EC 3.6.1.-)
NIAGMN
_10775
dnaB
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
NIAGMN
_17345
recJ
Transcription-repair coupling factor
NIAGMN
_24360
mfd
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter baumannii LAC-4
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila HP pepo 2.2
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Klebsiella pneumoniae MKP103
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea agglomerans CFBP13505 P0401
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa MRSN321
Pseudomonas aeruginosa PA14
Pseudomonas aeruginosa PUPa3
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas lactucae CFBP13502
Pseudomonas orientalis W4I3
Pseudomonas putida KT2440
Pseudomonas segetis P6
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingobium sp. HT1-2
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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