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SEED Subsystem: DNA-replication in
Escherichia coli ECRC101
Experiments:
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Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
MCAODC
_06055
recG
ATP-dependent DNA helicase RecQ
MCAODC
_04865
recQ
MCAODC
_07380
MCAODC
_07385
MCAODC
_07390
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
MCAODC
_05520
dnaA
MCAODC
_12355
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
MCAODC
_19140
ruvC
DNA polymerase I (
EC 2.7.7.7
)
MCAODC
_04650
polA
MCAODC
_10695
xni
DNA polymerase II (
EC 2.7.7.7
)
MCAODC
_01310
polB
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
MCAODC
_00650
dnaE
DNA polymerase III beta subunit (
EC 2.7.7.7
)
MCAODC
_05530
dnaN
DNA polymerase III chi subunit (
EC 2.7.7.7
)
MCAODC
_02315
holC
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
MCAODC
_22905
holB
DNA polymerase III delta subunit (
EC 2.7.7.7
)
MCAODC
_26555
holA
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
MCAODC
_00480
dnaQ
DNA polymerase III psi subunit (
EC 2.7.7.7
)
MCAODC
_01810
holD
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
MCAODC
_27390
dnaX
DNA polymerase III theta subunit (
EC 2.7.7.7
)
MCAODC
_19010
holE
DNA primase (EC 2.7.7.-)
MCAODC
_09175
dnaG
DNA primase (EC 2.7.7.-), phage-associated
MCAODC
_22415
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
MCAODC
_11670
recN
DNA replication protein DnaC
MCAODC
_01860
dnaC
MCAODC
_17510
dnaC
MCAODC
_24465
dnaC
DNA replication terminus site-binding protein
MCAODC
_17755
tus
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
MCAODC
_10580
recD
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
MCAODC
_10575
recB
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
MCAODC
_10565
recC
Helicase PriA essential for oriC/DnaA-independent DNA replication
MCAODC
_04220
priA
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
MCAODC
_19125
ruvA
Holliday junction DNA helicase RuvB
MCAODC
_19120
ruvB
Primosomal protein I
MCAODC
_01855
dnaT
MCAODC
_17180
MCAODC
_17515
MCAODC
_20125
eCs1768
MCAODC
_21505
eCs1768
MCAODC
_22745
eCs1768
MCAODC
_24470
Primosomal replication protein N
MCAODC
_02625
priB
Primosomal replication protein N prime prime
MCAODC
_27405
priC
RecA protein
MCAODC
_11230
recA
Recombination protein RecR
MCAODC
_27380
recR
Replicative DNA helicase (EC 3.6.1.-)
MCAODC
_03440
dnaB
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
MCAODC
_10100
recJ
Transcription-repair coupling factor
MCAODC
_22830
mfd
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter baumannii LAC-4
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila HP pepo 2.2
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Klebsiella pneumoniae MKP103
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea agglomerans CFBP13505 P0401
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa MRSN321
Pseudomonas aeruginosa PA14
Pseudomonas aeruginosa PUPa3
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas lactucae CFBP13502
Pseudomonas orientalis W4I3
Pseudomonas putida KT2440
Pseudomonas segetis P6
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingobium sp. HT1-2
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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