SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Escherichia coli ECRC101

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) MCAODC_06720 kdgK
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) No genes
2-keto-3-deoxygluconate permease (KDG permease) MCAODC_04365 kdgT
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) MCAODC_10445 kduI
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) No genes
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) MCAODC_16795 uxaB
Beta-glucuronidase (EC 3.2.1.31) MCAODC_17795 uidA
  MCAODC_17800 lacZ
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) MCAODC_08865 garD
D-mannonate oxidoreductase (EC 1.1.1.57) MCAODC_02075 uxuB
  MCAODC_14465 yeiQ
  MCAODC_16925 ydfI
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) No genes
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP MCAODC_02085 gntP
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC MCAODC_17780
  MCAODC_17785 uidC
Glucuronide transporter UidB MCAODC_17790 uidB
Hexuronate transporter MCAODC_09030 exuT
Hexuronate utilization operon transcriptional repressor ExuR MCAODC_09025 exuR
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) MCAODC_02080 uxuA
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) MCAODC_25870 ybhC
Polygalacturonase (EC 3.2.1.15) No genes
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor MCAODC_18925 kdgR
Transcriptional repressor UidR MCAODC_17805 uidR
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) MCAODC_09035 uxaC
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator MCAODC_02070 uxuR
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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