SEED Subsystem: DNA-replication in Escherichia coli ECRC101

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) OKFHMN_15545 recG
ATP-dependent DNA helicase RecQ OKFHMN_14360 recQ
  OKFHMN_16850
  OKFHMN_16855
  OKFHMN_16860
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA OKFHMN_15010 dnaA
  OKFHMN_21825
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) OKFHMN_26265 ruvC
DNA polymerase I (EC 2.7.7.7) OKFHMN_14150 polA
  OKFHMN_20170 xni
DNA polymerase II (EC 2.7.7.7) OKFHMN_10795 polB
DNA polymerase III alpha subunit (EC 2.7.7.7) OKFHMN_10135 dnaE
DNA polymerase III beta subunit (EC 2.7.7.7) OKFHMN_15020 dnaN
DNA polymerase III chi subunit (EC 2.7.7.7) OKFHMN_11810 holC
DNA polymerase III delta prime subunit (EC 2.7.7.7) OKFHMN_03545 holB
DNA polymerase III delta subunit (EC 2.7.7.7) OKFHMN_07340 holA
DNA polymerase III epsilon subunit (EC 2.7.7.7) OKFHMN_09965 dnaQ
DNA polymerase III psi subunit (EC 2.7.7.7) OKFHMN_11295 holD
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) OKFHMN_08165 dnaX
DNA polymerase III theta subunit (EC 2.7.7.7) OKFHMN_26395 holE
DNA primase (EC 2.7.7.-) OKFHMN_18660 dnaG
DNA primase (EC 2.7.7.-), phage-associated OKFHMN_00670
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN OKFHMN_21145 recN
DNA replication protein DnaC OKFHMN_11345 dnaC
  OKFHMN_27885 dnaC
DNA replication terminus site-binding protein OKFHMN_27655 tus
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) OKFHMN_20055 recD
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) OKFHMN_20050 recB
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) OKFHMN_20040 recC
Helicase PriA essential for oriC/DnaA-independent DNA replication OKFHMN_13720 priA
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA OKFHMN_26280 ruvA
Holliday junction DNA helicase RuvB OKFHMN_26285 ruvB
Primosomal protein I OKFHMN_03025
  OKFHMN_03385 eCs1768
  OKFHMN_05085
  OKFHMN_09610
  OKFHMN_11340 dnaT
  OKFHMN_25265 eCs1768
  OKFHMN_27880
  OKFHMN_28755 eCs1768
Primosomal replication protein N OKFHMN_12110 priB
Primosomal replication protein N prime prime OKFHMN_08180 priC
RecA protein OKFHMN_20705 recA
Recombination protein RecR OKFHMN_08155 recR
Replicative DNA helicase (EC 3.6.1.-) OKFHMN_12930 dnaB
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) OKFHMN_19580 recJ
Transcription-repair coupling factor OKFHMN_03470 mfd

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