SEED Subsystem: DNA Repair Base Excision in Escherichia coli ECOR38

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) HEPCGN_21395 ligA
DNA polymerase I (EC 2.7.7.7) HEPCGN_12785 polA
  HEPCGN_19425 xni
DNA polymerase II (EC 2.7.7.7) HEPCGN_08785 polB
DNA-3-methyladenine glycosylase (EC 3.2.2.20) HEPCGN_14930 tag
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) HEPCGN_02960 alkA
Endonuclease III (EC 4.2.99.18) HEPCGN_05910 nth
Endonuclease VIII HEPCGN_01220 nei
Exodeoxyribonuclease I (EC 3.1.11.1) HEPCGN_03270 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) HEPCGN_14460 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HEPCGN_18870 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 HEPCGN_20465 ung

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Or view this subsystem at the SEED (slow)