SEED Subsystem: DNA Repair Base Excision in Escherichia fergusonii Becca

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) EFB2_01465
DNA polymerase I (EC 2.7.7.7) EFB2_01119
  EFB2_04753
DNA polymerase II (EC 2.7.7.7) EFB2_03985
DNA-3-methyladenine glycosylase (EC 3.2.2.20) EFB2_00258
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) EFB2_01786
Endonuclease III (EC 4.2.99.18) EFB2_02359
Endonuclease VIII EFB2_03389
Exodeoxyribonuclease I (EC 3.1.11.1) EFB2_01845
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) EFB2_00178
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) EFB2_01009
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 EFB2_01316

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Or view this subsystem at the SEED (slow)