SEED Subsystem: Polyamine Metabolism in Dickeya dianthicola ME23

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) DZA65_RS07925
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) DZA65_RS17095
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) DZA65_RS12395
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) DZA65_RS21565
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD DZA65_RS00800
  DZA65_RS02030
Biosynthetic arginine decarboxylase (EC 4.1.1.19) DZA65_RS19595
Carbamate kinase (EC 2.7.2.2) DZA65_RS02040
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter DZA65_RS12190
N-carbamoylputrescine amidase (3.5.1.53) DZA65_RS21570
Ornithine decarboxylase (EC 4.1.1.17) DZA65_RS05225
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion DZA65_RS17210
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) DZA65_RS09790
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) DZA65_RS11315
  DZA65_RS12415
  DZA65_RS18565
  DZA65_RS22035
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) DZA65_RS09795
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) DZA65_RS09800
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) DZA65_RS09805
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A DZA65_RS17220
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) DZA65_RS12390
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) DZA65_RS12385
Spermidine synthase (EC 2.5.1.16) DZA65_RS17215
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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