SEED Subsystem: Nitrate and nitrite ammonification in Dickeya dianthicola ME23

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) DZA65_RS14745
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein DZA65_RS14755
  DZA65_RS19740
Nitrate ABC transporter, nitrate-binding protein DZA65_RS14765
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein DZA65_RS12490
Nitrate/nitrite sensor protein (EC 2.7.3.-) DZA65_RS12195
  DZA65_RS12485
Nitrate/nitrite transporter DZA65_RS12480
  DZA65_RS14810
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) DZA65_RS14750
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein DZA65_RS04465
NrfD protein DZA65_RS04460
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) DZA65_RS12465
Respiratory nitrate reductase beta chain (EC 1.7.99.4) DZA65_RS12460
Respiratory nitrate reductase delta chain (EC 1.7.99.4) DZA65_RS12455
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) DZA65_RS12450
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT DZA65_RS14770

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