SEED Subsystem: Polyamine Metabolism in Dickeya dianthicola 67-19

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) HGI48_RS07415
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) HGI48_RS16010
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) HGI48_RS11850
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) HGI48_RS20520
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD HGI48_RS00745
Biosynthetic arginine decarboxylase (EC 4.1.1.19) HGI48_RS18460
Carbamate kinase (EC 2.7.2.2) No genes
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter HGI48_RS11705
N-carbamoylputrescine amidase (3.5.1.53) HGI48_RS20525
Ornithine decarboxylase (EC 4.1.1.17) HGI48_RS04890
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion HGI48_RS16125
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) HGI48_RS09480
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) HGI48_RS04570
  HGI48_RS10850
  HGI48_RS11870
  HGI48_RS17500
  HGI48_RS21050
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) HGI48_RS09485
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) HGI48_RS09490
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) HGI48_RS09495
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A HGI48_RS16135
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) HGI48_RS11845
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) HGI48_RS11840
Spermidine synthase (EC 2.5.1.16) HGI48_RS16130
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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