SEED Subsystem: DNA Repair Base Excision in Dickeya dianthicola 67-19

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) HGI48_RS17145
DNA polymerase I (EC 2.7.7.7) HGI48_RS05065
  HGI48_RS21260
DNA polymerase II (EC 2.7.7.7) HGI48_RS18165
DNA-3-methyladenine glycosylase (EC 3.2.2.20) HGI48_RS00200
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) HGI48_RS04515
Endonuclease III (EC 4.2.99.18) HGI48_RS10545
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) HGI48_RS09830
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) HGI48_RS00715
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HGI48_RS03450
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 HGI48_RS15875

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