SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Dickeya dianthicola 67-19

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) HGI48_RS20810
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) HGI48_RS02125
2-keto-3-deoxygluconate permease (KDG permease) HGI48_RS12560
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) HGI48_RS11370
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) HGI48_RS13085
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) HGI48_RS02805
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) HGI48_RS17115
D-mannonate oxidoreductase (EC 1.1.1.57) HGI48_RS03640
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) HGI48_RS04685
  HGI48_RS12780
  HGI48_RS13635
Exopolygalacturonate lyase (EC 4.2.2.9) HGI48_RS11380
  HGI48_RS21435
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter HGI48_RS02795
  HGI48_RS13090
Hexuronate utilization operon transcriptional repressor ExuR HGI48_RS02790
  HGI48_RS17425
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) HGI48_RS21000
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) HGI48_RS11495
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) HGI48_RS15715
Pectin degradation protein KdgF HGI48_RS11365
Pectin lyase (EC 4.2.2.10) HGI48_RS02835
  HGI48_RS15495
Pectinesterase (EC 3.1.1.11) HGI48_RS15725
Polygalacturonase (EC 3.2.1.15) HGI48_RS05875
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN HGI48_RS17045
  HGI48_RS17725
Transcriptional regulator KdgR, KDG operon repressor HGI48_RS11490
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) HGI48_RS02800
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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