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SEED Subsystem: Bacterial Chemotaxis in
Dickeya dianthicola 67-19
Experiments:
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Role
Gene
Name
Aerotaxis sensor receptor protein
HGI48
_RS12260
HGI48
_RS12380
HGI48
_RS17120
Chemotaxis protein CheC -- inhibitor of MCP methylation
No genes
Chemotaxis protein CheD
No genes
Chemotaxis protein CheV (EC 2.7.3.-)
HGI48
_RS07815
Chemotaxis protein CheX
No genes
Chemotaxis protein methyltransferase CheR (
EC 2.1.1.80
)
HGI48
_RS13575
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
HGI48
_RS13565
Chemotaxis response - phosphatase CheZ
HGI48
_RS13560
Chemotaxis response regulator protein-glutamate methylesterase CheB (
EC 3.1.1.61
)
HGI48
_RS13570
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
HGI48
_RS00555
HGI48
_RS00645
HGI48
_RS02180
HGI48
_RS03600
HGI48
_RS07780
HGI48
_RS08805
HGI48
_RS12275
HGI48
_RS20925
Flagellar motor switch protein FliG
HGI48
_RS13415
Flagellar motor switch protein FliM
HGI48
_RS13445
Flagellar motor switch protein FliN
HGI48
_RS13450
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
HGI48
_RS06055
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE
HGI48
_RS15030
HGI48
_RS21065
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)
HGI48
_RS00280
HGI48
_RS01940
HGI48
_RS02275
HGI48
_RS05870
HGI48
_RS06380
HGI48
_RS09360
HGI48
_RS09365
HGI48
_RS09370
HGI48
_RS09375
HGI48
_RS09380
HGI48
_RS10420
HGI48
_RS10875
HGI48
_RS11305
HGI48
_RS11780
HGI48
_RS12090
HGI48
_RS12250
HGI48
_RS12390
HGI48
_RS13295
HGI48
_RS13335
HGI48
_RS13580
HGI48
_RS14030
HGI48
_RS15150
HGI48
_RS17325
HGI48
_RS17600
HGI48
_RS17815
HGI48
_RS18770
HGI48
_RS18900
HGI48
_RS20660
HGI48
_RS20665
HGI48
_RS20670
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)
No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
HGI48
_RS02430
HGI48
_RS13615
HGI48
_RS18395
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)
HGI48
_RS09765
Positive regulator of CheA protein activity (CheW)
HGI48
_RS13585
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
No genes
Signal transduction histidine kinase CheA (EC 2.7.3.-)
HGI48
_RS13590
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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