SEED Subsystem: Polyamine Metabolism in Dickeya dadantii 3937

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) DDA3937_RS07560
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) DDA3937_RS11820
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) DDA3937_RS00855
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD DDA3937_RS20465
Biosynthetic arginine decarboxylase (EC 4.1.1.19) DDA3937_RS18535
Carbamate kinase (EC 2.7.2.2) No genes
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter DDA3937_RS11645
N-carbamoylputrescine amidase (3.5.1.53) DDA3937_RS00850
Ornithine decarboxylase (EC 4.1.1.17) DDA3937_RS04870
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion DDA3937_RS16005
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) DDA3937_RS09460
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) DDA3937_RS00315
  DDA3937_RS10895
  DDA3937_RS11840
  DDA3937_RS17435
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) DDA3937_RS09465
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) DDA3937_RS09470
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) DDA3937_RS09475
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A DDA3937_RS16015
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) DDA3937_RS05975
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) DDA3937_RS11815
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) DDA3937_RS11810
Spermidine synthase (EC 2.5.1.16) DDA3937_RS16010
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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