SEED Subsystem: DNA Repair Base Excision in Dickeya dadantii 3937

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) DDA3937_RS17095
DNA polymerase I (EC 2.7.7.7) DDA3937_RS00105
  DDA3937_RS05065
DNA polymerase II (EC 2.7.7.7) DDA3937_RS18230
DNA-3-methyladenine glycosylase (EC 3.2.2.20) DDA3937_RS21070
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) DDA3937_RS04555
Endonuclease III (EC 4.2.99.18) DDA3937_RS10545
Endonuclease VIII DDA3937_RS06430
Exodeoxyribonuclease I (EC 3.1.11.1) DDA3937_RS09820
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DDA3937_RS20500
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DDA3937_RS03310
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 DDA3937_RS15790

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