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SEED Subsystem: DNA-replication in
Dickeya dadantii 3937
Experiments:
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Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
DDA3937
_RS00170
ATP-dependent DNA helicase RecQ
DDA3937
_RS19850
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
DDA3937
_RS06040
DDA3937
_RS21295
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
DDA3937
_RS10070
DNA polymerase I (
EC 2.7.7.7
)
DDA3937
_RS00105
DDA3937
_RS05065
DNA polymerase II (
EC 2.7.7.7
)
DDA3937
_RS18230
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
DDA3937
_RS05190
DNA polymerase III beta subunit (
EC 2.7.7.7
)
DDA3937
_RS21290
DNA polymerase III chi subunit (
EC 2.7.7.7
)
DDA3937
_RS01990
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
DDA3937
_RS13090
DNA polymerase III delta subunit (
EC 2.7.7.7
)
DDA3937
_RS06190
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
DDA3937
_RS16045
DNA polymerase III psi subunit (
EC 2.7.7.7
)
DDA3937
_RS03185
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
DDA3937
_RS05780
DNA polymerase III theta subunit (
EC 2.7.7.7
)
DDA3937
_RS10155
DNA primase (EC 2.7.7.-)
DDA3937
_RS02950
DDA3937
_RS09060
DDA3937
_RS16485
DNA primase (EC 2.7.7.-), phage-associated
DDA3937
_RS01350
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
DDA3937
_RS04325
DNA replication protein DnaC
No genes
DNA replication terminus site-binding protein
DDA3937
_RS10660
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
DDA3937
_RS11075
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
DDA3937
_RS11080
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
DDA3937
_RS11085
Helicase PriA essential for oriC/DnaA-independent DNA replication
DDA3937
_RS00935
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
DDA3937
_RS10080
Holliday junction DNA helicase RuvB
DDA3937
_RS10085
Primosomal protein I
No genes
Primosomal replication protein N
DDA3937
_RS17225
Primosomal replication protein N prime prime
DDA3937
_RS05760
RecA protein
DDA3937
_RS16245
Recombination protein RecR
DDA3937
_RS05790
Replicative DNA helicase (EC 3.6.1.-)
DDA3937
_RS17505
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
DDA3937
_RS03310
Transcription-repair coupling factor
DDA3937
_RS13000
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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