SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Dickeya dadantii 3937

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) DDA3937_RS00580
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) DDA3937_RS02170
2-keto-3-deoxygluconate permease (KDG permease) DDA3937_RS12505
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) DDA3937_RS11330
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) DDA3937_RS13020
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) DDA3937_RS02830
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) DDA3937_RS17065
D-mannonate oxidoreductase (EC 1.1.1.57) DDA3937_RS03550
  DDA3937_RS14980
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) DDA3937_RS12715
  DDA3937_RS13605
Exopolygalacturonate lyase (EC 4.2.2.9) DDA3937_RS11340
  DDA3937_RS21550
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter DDA3937_RS02820
  DDA3937_RS13025
Hexuronate utilization operon transcriptional repressor ExuR DDA3937_RS02815
  DDA3937_RS17395
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) DDA3937_RS00370
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) DDA3937_RS11450
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) DDA3937_RS15610
  DDA3937_RS15620
Pectin degradation protein KdgF DDA3937_RS11325
Pectin lyase (EC 4.2.2.10) DDA3937_RS02860
  DDA3937_RS12655
Pectinesterase (EC 3.1.1.11) DDA3937_RS15630
Polygalacturonase (EC 3.2.1.15) DDA3937_RS05830
  DDA3937_RS16960
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN DDA3937_RS16980
  DDA3937_RS17730
Transcriptional regulator KdgR, KDG operon repressor DDA3937_RS11445
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) DDA3937_RS02825
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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