SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Echinicola vietnamensis KMM 6221, DSM 17526

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Echvi_3631
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) Echvi_4005
2-keto-3-deoxygluconate permease (KDG permease) No genes
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Echvi_4006
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) Echvi_1571
  Echvi_2842
Alpha-glucuronidase (EC 3.2.1.139) Echvi_1863
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) Echvi_3071
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) No genes
D-mannonate oxidoreductase (EC 1.1.1.57) Echvi_3101
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) Echvi_1163
  Echvi_1632
  Echvi_2662
  Echvi_2663
  Echvi_2665
  Echvi_2670
  Echvi_2672
  Echvi_2677
  Echvi_3006
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter Echvi_0409
  Echvi_3106
Hexuronate utilization operon transcriptional repressor ExuR Echvi_3038
  Echvi_3073
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) Echvi_3952
Mannonate dehydratase (EC 4.2.1.8) Echvi_1869
  Echvi_3100
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) No genes
Polygalacturonase (EC 3.2.1.15) Echvi_0930
  Echvi_1320
  Echvi_1639
  Echvi_1644
  Echvi_3079
  Echvi_3089
  Echvi_3398
  Echvi_3400
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN Echvi_0918
  Echvi_1631
  Echvi_1643
  Echvi_3076
  Echvi_3399
  Echvi_4071
Transcriptional regulator KdgR, KDG operon repressor No genes
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) Echvi_3072
  Echvi_3102
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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