SEED Subsystem: L-rhamnose utilization in Phocaeicola dorei CL03T12C01

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) ABI39_RS09015
Alfa-L-rhamnosidase (EC 3.2.1.40) ABI39_RS00965
  ABI39_RS02585
  ABI39_RS13245
  ABI39_RS13260
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) No genes
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) No genes
L-rhamnose isomerase (EC 5.3.1.14) ABI39_RS02995
L-rhamnose isomerase (EC 5.3.1.14) ABI39_RS02995
L-rhamnose mutarotase ABI39_RS00805
L-rhamnose operon regulatory protein RhaS No genes
L-rhamnose operon transcriptional activator RhaR No genes
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter ABI39_RS01970
  ABI39_RS03000
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) No genes
Lactaldehyde reductase (EC 1.1.1.77) ABI39_RS01085
  ABI39_RS05200
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF ABI39_RS14430
Predicted L-rhamnose ABC transporter, ATP-binding component No genes
Predicted L-rhamnose ABC transporter, substrate-binding component No genes
Predicted L-rhamnose ABC transporter, transmembrane component 1 No genes
Predicted L-rhamnose ABC transporter, transmembrane component 2 No genes
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase ABI39_RS00980
  ABI39_RS01030
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster ABI39_RS00815
  ABI39_RS00875
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT No genes
Rhamnogalacturonides degradation protein RhiN ABI39_RS00810
  ABI39_RS00985
  ABI39_RS02685
  ABI39_RS04855
  ABI39_RS09055
  ABI39_RS09475
  ABI39_RS13235
Rhamnulokinase (EC 2.7.1.5) ABI39_RS02990
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) ABI39_RS03005
Transcriptional regulator of rhamnose utilization, AraC family ABI39_RS03035
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase ABI39_RS00870
  ABI39_RS01005
  ABI39_RS09060
  ABI39_RS09105
  ABI39_RS09165
  ABI39_RS10295

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Or view this subsystem at the SEED (slow)