SEED Subsystem: Polyamine Metabolism in Escherichia coli BL21

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) ECD_01401
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) ECD_01121
  ECD_01397
Agmatinase (EC 3.5.3.11) ECD_02767
Agmatine deiminase (EC 3.5.3.12) No genes
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) ECD_03988
Arginine/agmatine antiporter ECD_03986
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD ECD_01574
Biosynthetic arginine decarboxylase (EC 4.1.1.19) ECD_02768
Carbamate kinase (EC 2.7.2.2) ECD_00278
  ECD_00471
  ECD_03712
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) ECD_00649
  ECD_02795
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion ECD_00121
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) ECD_00859
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) ECD_01124
  ECD_01398
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) ECD_00860
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) ECD_00861
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) ECD_00862
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE ECD_00648
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A ECD_00119
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) ECD_01553
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) ECD_01123
  ECD_01399
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) ECD_01122
  ECD_01400
Spermidine synthase (EC 2.5.1.16) ECD_00120
Transcriptional regulator of catabolic arginine decarboxylase (adiA) ECD_03987
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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