SEED Subsystem: Nitrate and nitrite ammonification in Escherichia coli BL21

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) No genes
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly ECD_03946
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly ECD_03947
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly ECD_03948
Cytochrome c-type protein NapC ECD_02129
Cytochrome c-type protein NrfB precursor ECD_03943
Cytochrome c552 precursor (EC 1.7.2.2) ECD_03942
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) ECD_02135
Ferredoxin-type protein NapG (periplasmic nitrate reductase) ECD_02132
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein No genes
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit ECD_02130
Nitrate/nitrite response regulator protein ECD_02120
Nitrate/nitrite sensor protein (EC 2.7.3.-) ECD_01200
  ECD_02360
Nitrate/nitrite transporter ECD_01427
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) ECD_03216
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) ECD_03217
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC ECD_03218
Nitrite transporter from formate/nitrite family No genes
NrfC protein ECD_03944
NrfD protein ECD_03945
Periplasmic nitrate reductase component NapD ECD_02134
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) ECD_02133
Polyferredoxin NapH (periplasmic nitrate reductase) ECD_02131
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) ECD_01202
  ECD_01426
Respiratory nitrate reductase beta chain (EC 1.7.99.4) ECD_01203
  ECD_01425
Respiratory nitrate reductase delta chain (EC 1.7.99.4) ECD_01204
  ECD_01424
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) ECD_01205
  ECD_01423
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT No genes

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