SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Escherichia coli BL21

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) ECD_03374
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) No genes
2-keto-3-deoxygluconate permease (KDG permease) ECD_03795
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) ECD_02691
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) ECD_03521
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) ECD_01478
Beta-glucuronidase (EC 3.2.1.31) ECD_01586
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) ECD_02993
D-mannonate oxidoreductase (EC 1.1.1.57) ECD_01501
  ECD_02102
  ECD_04192
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) ECD_03603
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP ECD_04190
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC ECD_01584
Glucuronide transporter UidB ECD_01585
Hexuronate transporter ECD_02962
  ECD_03520
  ECD_04071
Hexuronate utilization operon transcriptional repressor ExuR ECD_02963
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) ECD_04191
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) ECD_00725
Polygalacturonase (EC 3.2.1.15) No genes
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor ECD_01798
Transcriptional repressor UidR ECD_01587
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) ECD_02961
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator ECD_04193
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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