SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Azospirillum sp. SherDot2

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) MPMX19_05795
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) MPMX19_06076
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) MPMX19_05789
2-keto-3-deoxygluconate permease (KDG permease) MPMX19_04268
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) MPMX19_05788
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) MPMX19_02894
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) MPMX19_03273
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) MPMX19_04852
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) MPMX19_02889
D-mannonate oxidoreductase (EC 1.1.1.57) MPMX19_03991
  MPMX19_06059
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) MPMX19_04188
  MPMX19_06451
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter MPMX19_03992
  MPMX19_04854
Hexuronate utilization operon transcriptional repressor ExuR No genes
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) MPMX19_02896
  MPMX19_06220
Mannonate dehydratase (EC 4.2.1.8) MPMX19_02891
  MPMX19_03990
  MPMX19_06064
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF MPMX19_05790
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) No genes
Polygalacturonase (EC 3.2.1.15) No genes
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor No genes
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) MPMX19_05792
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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