Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in
Azospirillum sp. SherDot2
Experiments:
Add
Role
Gene
Name
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)
MPMX19
_02327
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
No genes
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
No genes
DNA topoisomerase I (
EC 5.99.1.2
)
MPMX19
_01509
GTP-sensing transcriptional pleiotropic repressor codY
No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication
MPMX19
_02107
Hydrolase (HAD superfamily) in cluster with DUF1447
No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone
No genes
Methionyl-tRNA formyltransferase (
EC 2.1.2.9
)
MPMX19
_02006
Peptide deformylase (
EC 3.5.1.88
)
MPMX19
_01578
MPMX19
_02007
MPMX19
_06762
Protein of unknown function DUF1447
No genes
Protein of unknown function Smg
No genes
Protein serine/threonine phosphatase PrpC, regulation of stationary phase
MPMX19
_04218
Ribonuclease HII (
EC 3.1.26.4
)
MPMX19
_05650
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
MPMX19
_02413
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)
No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)
MPMX19
_02604
Ribulose-phosphate 3-epimerase (
EC 5.1.3.1
)
MPMX19
_01092
MPMX19
_02946
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
MPMX19
_01508
Serine/threonine protein kinase PrkC, regulator of stationary phase
No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form
No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I
No genes
Trk system potassium uptake protein TrkA
No genes
Uncharacterized protein with LysM domain, COG1652
No genes
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
No genes
Zn-dependent hydrolase, RNA-metabolising
No genes
cytochrome d ubiquinol oxidase, subunit II-related protein
No genes
tRNA:m(5)U-54 MTase gid
MPMX19
_01156
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa PA14
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
Go
Or view this subsystem at the SEED
(slow)