SEED Subsystem: Serine-glyoxylate cycle in Agrobacterium fabrum C58

Role	Gene	Name
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Atu4823
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Atu1418
	Atu1764
	Atu2123
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL)	No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Atu3731
Acetoacetyl-CoA reductase (EC 1.1.1.36)	Atu2770
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	No genes
Aconitate hydratase (EC 4.2.1.3)	Atu2685
Citrate synthase (EC 2.3.3.1)	No genes
Citrate synthase (si) (EC 2.3.3.1)	Atu1392
	Atu4851
	Atu5306
	Atu5307
Enolase (EC 4.2.1.11)	Atu1426
Formate--tetrahydrofolate ligase (EC 6.3.4.3)	No genes
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2)	No genes
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)	No genes
GDSL-like lipase/acylhydrolase	No genes
Glycerate kinase (EC 2.7.1.31)	No genes
Isocitrate lyase (EC 4.1.3.1)	Atu0607
Malate dehydrogenase (EC 1.1.1.37)	Atu2639
Malate synthase-related protein	No genes
Malyl-CoA lyase (EC 4.1.3.24)	No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	Atu0589
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Atu3479
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Atu3478
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)	No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Atu0589
Methylmalonyl-CoA mutase (EC 5.4.99.2)	Atu3580
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27)	No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Atu0035
Phosphoglyceromutase	No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3)	Atu3586
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425	No genes
Serine hydroxymethyltransferase (EC 2.1.2.1)	Atu1165
	Atu4314
Serine--glyoxylate aminotransferase (EC 2.6.1.45)	No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51)	No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Atu2643
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Atu2642
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	Atu2637
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	Atu2638
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	No genes
crotonyl-CoA reductase	No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein	No genes
decarboxylase	No genes
isobutyryl-CoA dehydrogenase	No genes
low-specificity D-threonine aldolase	Atu3927
	Atu3948
polyhydroxyalkanoate synthesis repressor PhaR	No genes
putative glycerate kinase	No genes
putative isobutyryl-CoA mutase, chain B	No genes