SEED Subsystem: Oxidative stress in Agrobacterium fabrum C58

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein Atu1480
  Atu3655
Catalase (EC 1.11.1.6) Atu4642
  Atu5491
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR Atu0354
Ferroxidase (EC 1.16.3.1) Atu2477
  Atu4777
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake Atu2502
Hydrogen peroxide-inducible genes activator Atu4641
Iron-binding ferritin-like antioxidant protein Atu2477
  Atu4777
Iron-responsive regulator Irr Atu0153
Manganese superoxide dismutase (EC 1.15.1.1) Atu0876
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR Atu3666
  Atu3668
NnrS protein involved in response to NO Atu4383
  Atu4404
Non-specific DNA-binding protein Dps Atu2477
  Atu4777
Organic hydroperoxide resistance protein Atu0847
Organic hydroperoxide resistance transcriptional regulator Atu0846
  Atu0852
  Atu4864
  Atu5064
  Atu5211
  Atu5273
Paraquat-inducible protein A No genes
Paraquat-inducible protein B No genes
Peroxidase (EC 1.11.1.7) Atu4642
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) Atu1990
  Atu2165
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR Atu3915
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) Atu4583
  Atu4726
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR Atu1518
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family Atu2394
transcriptional regulator, Fur family No genes

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