SEED Subsystem: DNA Repair Base Excision in Agrobacterium fabrum C58

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) Atu5097
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Atu0840
  Atu6090
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Atu4632
  Atu5051
  Atu5055
DNA ligase (EC 6.5.1.2) Atu2082
DNA polymerase I (EC 2.7.7.7) Atu0110
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Atu0670
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Atu3335
  Atu3588
Endonuclease III (EC 4.2.99.18) Atu4457
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Atu0321
Ku domain protein Atu4631
  Atu5049
  Atu5050
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Atu1586
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Atu2455

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