SEED Subsystem: Methionine Biosynthesis in Dickeya dadantii 3937

Experiments:

Role Gene Name PDB  
⨯
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) DDA3937_RS00960 -0.6
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) DDA3937_RS19040 +0.1
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) DDA3937_RS11855 -1.3
  DDA3937_RS20380 -0.0
Adenosylhomocysteinase (EC 3.3.1.1) No genes
Archaeal S-adenosylmethionine synthetase (EC 2.5.1.6) No genes
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) No genes
Cystathionine beta-lyase (EC 4.4.1.8) DDA3937_RS01815 +0.4
Cystathionine beta-lyase, type II (EC 4.4.1.8) No genes
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
Cystathionine gamma-synthase (EC 2.5.1.48) DDA3937_RS00950 -0.1
Cysteine synthase (EC 2.5.1.47) DDA3937_RS04425 +0.6
  DDA3937_RS04490 -1.3
  DDA3937_RS17805 -0.0
  DDA3937_RS21525 -0.5
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter No genes
Homocysteine S-methyltransferase (EC 2.1.1.10) DDA3937_RS01880 -0.2
Homoserine O-acetyltransferase (EC 2.3.1.31) DDA3937_RS01965 -0.0
Homoserine O-succinyltransferase (EC 2.3.1.46) DDA3937_RS19065 -0.3
Homoserine dehydrogenase (EC 1.1.1.3) DDA3937_RS00955 +0.1
  DDA3937_RS18415 -0.0
Homoserine kinase (EC 2.7.1.39) DDA3937_RS18410 -0.4
Methionine ABC transporter ATP-binding protein DDA3937_RS07975 -0.1
  DDA3937_RS09405 +0.3
  DDA3937_RS16845 -0.4
  DDA3937_RS18745 +0.2
Methionine ABC transporter permease protein DDA3937_RS07980 -0.4
  DDA3937_RS09410 +0.1
  DDA3937_RS16850 -0.1
Methionine ABC transporter substrate-binding protein DDA3937_RS07970 +0.3
  DDA3937_RS09400 +0.0
  DDA3937_RS16855 +0.5
Methionine repressor MetJ DDA3937_RS00945 -1.1
Methionine synthase activation domain (EC 2.1.1.13) No genes
Methionine transporter MetT No genes
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) No genes
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) No genes
Predicted regulator of methionine metabolism, ArsR family No genes
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) No genes
S-adenosylmethionine synthetase (EC 2.5.1.6) DDA3937_RS18540 N.D.
S-ribosylhomocysteine lyase (EC 4.4.1.21) DDA3937_RS16190 -0.9
SAM-dependent methlytransferase UbiG No genes
SAM-dependent methlytransferase YrrT No genes
Serine acetyltransferase (EC 2.3.1.30) DDA3937_RS02620 -0.6
  DDA3937_RS20400 N.D.
Substrate-specific component MtsA of methionine-regulated ECF transporter No genes
Transcriptional activator MetR DDA3937_RS20385 +0.4
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter No genes

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