SEED Subsystem: TCA Cycle in Dickeya dadantii 3937

Experiments:

Role Gene Name Upstate  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) DDA3937_RS06460 N.D.
Aconitate hydratase (EC 4.2.1.3) DDA3937_RS12555 -0.1
Aconitate hydratase 2 (EC 4.2.1.3) DDA3937_RS17885 N.D.
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) DDA3937_RS07830 N.D.
  DDA3937_RS09780 N.D.
Citrate synthase (si) (EC 2.3.3.1) DDA3937_RS06435 N.D.
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) DDA3937_RS06465 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) DDA3937_RS04540 -0.3
Fumarate hydratase class II (EC 4.2.1.2) DDA3937_RS10655 +0.2
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) DDA3937_RS11470 N.D.
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) DDA3937_RS02970 -0.4
  DDA3937_RS07530 +0.3
  DDA3937_RS13075 +0.5
Malate:quinone oxidoreductase (EC 1.1.5.4) DDA3937_RS14620 -0.2
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) DDA3937_RS06450 -0.0
  DDA3937_RS18965 -1.3
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) DDA3937_RS06455 -0.7
  DDA3937_RS18970 -0.9
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) DDA3937_RS06475 -1.3
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) DDA3937_RS06470 N.D.
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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