SEED Subsystem: tRNA processing in Escherichia coli BW25113

Experiments:

Role Gene Name LB Aerobic with Irgasan 0.0000003125 mM  
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) No genes
Ribonuclease D (EC 3.1.26.3) b1804 rnd -0.4
Ribonuclease P protein component (EC 3.1.26.5) b3704 rnpA N.D.
Ribonuclease PH (EC 2.7.7.56) b3643 rph -0.2
Ribonuclease T (EC 3.1.13.-) b1652 rnt N.D.
Ribonuclease Z (EC 3.1.26.11) b2268 elaC -0.2
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) b2745 truD -0.2
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) b2318 truA -0.5
tRNA pseudouridine synthase B (EC 4.2.1.70) b3166 truB -2.5
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase b0661 miaB -0.1
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) b2559 tadA N.D.
tRNAHis-5'-guanylyltransferase No genes

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