SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Escherichia coli BL21

Experiments:

Role Gene Name Laval1257  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) ECD_03374 -0.4
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) No genes
2-keto-3-deoxygluconate permease (KDG permease) ECD_03795 -0.2
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) ECD_02691 +0.3
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) ECD_03521 +1.9
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) ECD_01478 -1.3
Beta-glucuronidase (EC 3.2.1.31) ECD_01586 -0.4
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) ECD_02993 +0.0
D-mannonate oxidoreductase (EC 1.1.1.57) ECD_01501 N.D.
  ECD_02102 +0.2
  ECD_04192 +0.2
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) ECD_03603 +0.2
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP ECD_04190 +0.2
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC ECD_01584 -0.0
Glucuronide transporter UidB ECD_01585 N.D.
Hexuronate transporter ECD_02962 +0.5
  ECD_03520 +1.4
  ECD_04071 +0.1
Hexuronate utilization operon transcriptional repressor ExuR ECD_02963 +0.1
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Mannonate dehydratase (EC 4.2.1.8) ECD_04191 -0.1
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) No genes
Pectin degradation protein KdgF No genes
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) ECD_00725 +0.4
Polygalacturonase (EC 3.2.1.15) No genes
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN No genes
Transcriptional regulator KdgR, KDG operon repressor ECD_01798 -0.5
Transcriptional repressor UidR ECD_01587 N.D.
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) ECD_02961 -0.4
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator ECD_04193 -1.7
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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