SEED Subsystem: Bacterial Chemotaxis in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x  
⨯
Aerotaxis sensor receptor protein No genes
Chemotaxis protein CheC -- inhibitor of MCP methylation No genes
Chemotaxis protein CheD No genes
Chemotaxis protein CheV (EC 2.7.3.-) PS417_19615 +0.1
  PS417_21580 -0.0
  PS417_04725 +0.4
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) PS417_05970 +0.2
  PS417_13900 -0.0
  PS417_21575 +0.1
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY PS417_10330 +0.6
  PS417_13890 N.D.
  PS417_19690 -0.0
Chemotaxis response - phosphatase CheZ PS417_19685 +0.2
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) PS417_05985 +0.0
  PS417_19675 -1.3
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) PS417_11130 -0.4
  PS417_27765 -0.1
  PS417_04065 -1.9
  PS417_04075 -3.8
  PS417_04080 -1.3
  PS417_04085 -0.0
Flagellar motor switch protein FliG PS417_19800 +0.6
Flagellar motor switch protein FliM PS417_19755 +0.3
Flagellar motor switch protein FliN PS417_19750 N.D.
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE No genes
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) PS417_05960 -0.1
  PS417_07020 +0.4
  PS417_08970 +0.1
  PS417_09075 -0.2
  PS417_10295 -0.1
  PS417_11645 N.D.
  PS417_13060 +0.2
  PS417_14690 -0.1
  PS417_15675 -0.1
  PS417_01820 -0.1
  PS417_01825 -0.2
  PS417_20585 +0.2
  PS417_02155 -0.1
  PS417_23585 +0.1
  PS417_02980 +1.0
  PS417_03945 -0.2
  PS417_04510 -0.1
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) PS417_14450 +0.1
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) PS417_19650 +0.3
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) No genes
Signal transduction histidine kinase CheA (EC 2.7.3.-) PS417_19680 N.D.
  PS417_26650 -0.4

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