SEED Subsystem: Deoxyribose and Deoxynucleoside Catabolism in Escherichia coli BW25113

Experiments:

Role Gene Name Guanosine 0.35306 mM (C)  
⨯
Deoxyribonucleoside regulator DeoR (transcriptional repressor) No genes
Deoxyribose operon repressor, DeoR family b0840 deoR +10.1
Deoxyribose-phosphate aldolase (EC 4.1.2.4) b4381 deoC +3.3
Nucleoside permease NupC b2393 nupC -0.2
Phosphopentomutase (EC 5.4.2.7) b4383 deoB -2.3
Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Purine nucleoside phosphorylase (EC 2.4.2.1) b4384 deoD -1.9
Putative deoxyribonuclease YjjV b4378 yjjV -0.1
Putative deoxyribose-specific ABC transporter, ATP-binding protein No genes
Putative deoxyribose-specific ABC transporter, permease protein No genes
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) No genes
Ribokinase (EC 2.7.1.15) b3752 rbsK +2.5
Thymidine phosphorylase (EC 2.4.2.4) b4382 deoA +1.2

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