SEED Subsystem: DNA Repair Base Excision in Rhodanobacter sp. FW510-T8

Experiments:

Role Gene Name Survival; Treatment=20250415-M4-SZ1-UF; TreatmentDuration=1week; Outgrowth=R2A_Kan5  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD OKGIIK_01670 +0.1
DNA ligase (EC 6.5.1.2) OKGIIK_07500 ligA N.D.
  OKGIIK_12905 ligB +0.8
DNA polymerase I (EC 2.7.7.7) OKGIIK_10715 -0.6
  OKGIIK_16785 polA +1.0
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) OKGIIK_13685 -1.1
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) OKGIIK_07210 -0.0
Endonuclease III (EC 4.2.99.18) OKGIIK_04675 nth -0.1
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) OKGIIK_07470 sbcB -0.8
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) OKGIIK_13060 mutM +0.3
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) OKGIIK_06995 recJ -0.4
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 OKGIIK_12930 ung +1.1

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