| Role | Gene | Name | Ying_all64 rep A; time point 3 | |
|---|
| | | ⨯ | |
| Agmatinase (EC 3.5.3.11) | ABIE41_RS18400 | | -0.2 | |
| | ABIE41_RS19205 | | -0.1 | |
| | ABIE41_RS21190 | | +0.0 | |
| Agmatine deiminase (EC 3.5.3.12) | No genes | | | |
| Arginase (EC 3.5.3.1) | ABIE41_RS02350 | | -1.3 | |
| Arginine ABC transporter, ATP-binding protein ArtP | No genes | | | |
| Arginine ABC transporter, periplasmic arginine-binding protein ArtI | No genes | | | |
| Arginine ABC transporter, periplasmic arginine-binding protein ArtJ | No genes | | | |
| Arginine ABC transporter, permease protein ArtM | No genes | | | |
| Arginine ABC transporter, permease protein ArtQ | No genes | | | |
| Arginine N-succinyltransferase (EC 2.3.1.109) | No genes | | | |
| Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) | No genes | | | |
| Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) | No genes | | | |
| Arginine decarboxylase (EC 4.1.1.19) | ABIE41_RS08335 | | N.D. | |
| Arginine decarboxylase, catabolic (EC 4.1.1.19) | No genes | | | |
| Arginine deiminase (EC 3.5.3.6) | No genes | | | |
| Arginine pathway regulatory protein ArgR, repressor of arg regulon | No genes | | | |
| Arginine permease RocE | No genes | | | |
| Arginine utilization protein RocB | No genes | | | |
| Arginine utilization regulatory protein RocR | No genes | | | |
| Arginine/agmatine antiporter | No genes | | | |
| Arginine/ornithine ABC transporter, ATP-binding protein AotP | No genes | | | |
| Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein | No genes | | | |
| Arginine/ornithine ABC transporter, permease protein AotM | No genes | | | |
| Arginine/ornithine ABC transporter, permease protein AotQ | No genes | | | |
| Arginine/ornithine antiporter ArcD | ABIE41_RS02235 | | +0.2 | |
| Biosynthetic arginine decarboxylase (EC 4.1.1.19) | No genes | | | |
| Carbamate kinase (EC 2.7.2.2) | No genes | | | |
| Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | ABIE41_RS07915 | | -0.5 | |
| Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) | No genes | | | |
| Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) | No genes | | | |
| Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | No genes | | | |
| Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) | No genes | | | |
| Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | ABIE41_RS21180 | | +0.0 | |
| N-carbamoylputrescine amidase (3.5.1.53) | No genes | | | |
| NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | No genes | | | |
| Ornithine aminotransferase (EC 2.6.1.13) | No genes | | | |
| Ornithine carbamoyltransferase (EC 2.1.3.3) | ABIE41_RS04335 | | N.D. | |
| Ornithine cyclodeaminase (EC 4.3.1.12) | ABIE41_RS00285 | | -0.1 | |
| | ABIE41_RS02345 | | -0.0 | |
| | ABIE41_RS21090 | | +0.1 | |
| Ornithine decarboxylase (EC 4.1.1.17) | ABIE41_RS08335 | | N.D. | |
| Putrescine aminotransferase (EC 2.6.1.82) | No genes | | | |
| Succinylarginine dihydrolase (EC 3.5.3.23) | No genes | | | |
| Succinylglutamate desuccinylase (EC 3.5.1.96) | ABIE41_RS10695 | | +0.2 | |
| Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) | No genes | | | |
| Succinylornithine transaminase (EC 2.6.1.81) | No genes | | | |
| Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family | No genes | | | |
| Transcriptional regulator of catabolic arginine decarboxylase (adiA) | No genes | | | |