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SEED Subsystem: Multidrug Resistance Efflux Pumps in
Pseudomonas sp. RS175
Experiments:
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Role
Gene
Name
L-tyrosine 5 mM (C)
⨯
Acriflavin resistance protein
No genes
Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)
PFR28
_02257
N.D.
Macrolide-specific efflux protein MacA
PFR28
_02258
N.D.
Membrane fusion protein of RND family multidrug efflux pump
No genes
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
PFR28
_01102
-0.0
Multidrug efflux RND membrane fusion protein MexC
PFR28
_00632
+3.3
Multidrug efflux RND transporter MexD
No genes
Multidrug efflux pump component MtrF
No genes
Multidrug resistance efflux pump PmrA
No genes
Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1)
No genes
Probable outer membrane component of multidrug efflux pump
No genes
Probable transcription regulator protein of MDR efflux pump cluster
No genes
RND efflux system, inner membrane transporter CmeB
PFR28
_00631
+3.1
PFR28
_02013
-0.1
PFR28
_02080
+0.1
PFR28
_02463
+0.1
RND efflux system, membrane fusion protein CmeA
PFR28
_02012
-0.2
PFR28
_02081
-0.1
PFR28
_02462
+0.0
RND efflux system, outer membrane lipoprotein CmeC
PFR28
_00630
+3.2
PFR28
_02279
-0.0
RND efflux system, outer membrane lipoprotein, NodT family
No genes
Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family
No genes
Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family
PFR28
_00633
-0.1
Transcriptional regulator NfxB
No genes
Type I secretion outer membrane protein, TolC precursor
PFR28
_01733
-0.0
PFR28
_01994
-0.0
PFR28
_02285
-0.1
PFR28
_05090
+0.1
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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