SEED Subsystem: Glycine and Serine Utilization in Escherichia coli BW25113

Experiments:

Role Gene Name retron_Ec_48_control  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) b3617 kbl -0.6
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) b2905 gcvT -1.3
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) b2913 serA +0.1
D-serine dehydratase (EC 4.3.1.18) b2366 dsdA -0.3
D-serine dehydratase transcriptional activator b2364 dsdC -0.3
D-serine permease DsdX b2365 dsdX +0.2
D-serine/D-alanine/glycine transporter b4208 cycA -0.4
Glycerate kinase (EC 2.7.1.31) b0514 glxK -0.2
Glycine cleavage system H protein b2904 gcvH -0.9
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) b2903 gcvP -1.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) b1386 tynA +0.3
Phosphoserine aminotransferase (EC 2.6.1.52) b0907 serC +0.4
Phosphoserine phosphatase (EC 3.1.3.3) b4388 serB -0.2
Serine hydroxymethyltransferase (EC 2.1.2.1) b2551 glyA N.D.
Serine transporter b2796 sdaC +1.2
  b2845 yqeG -0.4
  b3539 yhjV +0.0
  b3110 yhaO +0.3
Seryl-tRNA synthetase (EC 6.1.1.11) b0893 serS N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) b3117 tdcB -0.6

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