SEED Subsystem: tRNA processing in Escherichia coli BW25113

Role	Gene	Name	vcDART vector transformation; liquid outgrowth assay
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase	No genes
Ribonuclease BN (EC 3.1.-.-)	No genes
Ribonuclease D (EC 3.1.26.3)	b1804	rnd	+0.5
Ribonuclease P protein component (EC 3.1.26.5)	b3704	rnpA	N.D.
Ribonuclease PH (EC 2.7.7.56)	b3643	rph	+0.0
Ribonuclease T (EC 3.1.13.-)	b1652	rnt	N.D.
Ribonuclease Z (EC 3.1.26.11)	b2268	elaC	+0.3
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8)	No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-)	b2745	truD	+0.5
tRNA pseudouridine 55 synthase (EC 4.2.1.70)	No genes
tRNA pseudouridine synthase A (EC 4.2.1.70)	b2318	truA	+0.5
tRNA pseudouridine synthase B (EC 4.2.1.70)	b3166	truB	+2.4
tRNA(Ile)-lysidine synthetase	No genes
tRNA-i(6)A37 methylthiotransferase	b0661	miaB	-1.2
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	b2559	tadA	N.D.
tRNAHis-5'-guanylyltransferase	No genes