SEED Subsystem: Heat shock dnaK gene cluster extended in Escherichia coli BW25113

Experiments:

Role Gene Name vcDART vector transformation; liquid outgrowth assay  
⨯
Chaperone protein DnaJ b0015 dnaJ -0.5
Chaperone protein DnaK b0014 dnaK +4.0
  b0650 hscC +0.0
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX b2962 yggX -0.8
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) b2947 gshB -0.6
Heat shock protein GrpE b2614 grpE +0.2
Heat-inducible transcription repressor HrcA No genes
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) b2954 yggV -0.3
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH b3461 rpoH N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB b2955 yggW +0.4
Ribonuclease PH (EC 2.7.7.56) b3643 rph +0.0
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) b2946 yggJ +3.0
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) b3259 prmA -0.9
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) b3400 hslR +0.1
Signal peptidase-like protein No genes
Translation elongation factor LepA b2569 lepA +0.5
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I b3146 yraL -1.2
tmRNA-binding protein SmpB b2620 smpB +0.7

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