SEED Subsystem: Experimental tye in Escherichia coli BW25113

Experiments:

Role Gene Name vcDART vector transformation; agar assay  
2H phosphoesterase superfamily protein Bsu1186 (yjcG) No genes
5-aminolevulinate synthase (EC 2.3.1.37) No genes
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, YtcI homolog No genes
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) b2436 hemF +1.7
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) b3867 hemN +0.1
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative No genes
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2 No genes
Cytochrome c-type biogenesis protein CcdA (DsbD analog) No genes
Cytochrome c-type biogenesis protein CcsA/ResC No genes
DUF1801 domain-containing protein No genes
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) b0475 hemH N.D.
GNAT family acetyltransferase YjcF No genes
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) b0154 hemL N.D.
Glutamyl-tRNA reductase (EC 1.2.1.70) b1210 hemA N.D.
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase No genes
Homolog of E. coli HemY protein No genes
Hypothetical membrane protein, possible involvement in cytochrome functioning/assembly No genes
Hypothetical protein Q, similar to Chlorite dismutase No genes
Hypothetical protein SAV1831 No genes
Hypothetical protein SAV1869 No genes
Hypothetical protein, ydbS homolog No genes
Hypothetical protein, ydbT homolog No genes
Hypothetical, related to broad specificity phosphatases COG0406 No genes
Methyltransferase (EC 2.1.1.-) colocalized with Q No genes
Periplasmic/membrane protein associated with DUF414 No genes
Porphobilinogen deaminase (EC 2.5.1.61) b3805 hemC N.D.
Porphobilinogen synthase (EC 4.2.1.24) b0369 hemB N.D.
Possibly related to ydbT No genes
Precorrin-2 oxidase (EC 1.3.1.76) b3368 cysG +0.2
Protein of unknown function DUF414 b3866 yihI +0.2
Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4) No genes
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) b3850 hemG N.D.
Putative acetyl esterase YjcH (EC 3.1.1.-) No genes
Putative lipoprotein SAV1865 No genes
Putative membrane protein Q2 colocalized with Q No genes
Putative nitroreductase family protein SACOL0874 No genes
Putative oxidoreductase ferredoxin-type protein, clusters with CPO No genes
Ribonuclease D (EC 3.1.26.3) b1804 rnd +0.5
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin ferrochelatase (EC 4.99.1.4) b3368 cysG +0.2
Small hypothetical protein Hyp1 No genes
Sua5 YciO YrdC YwlC family protein No genes
Uncharacterized SAV1743 homolog No genes
Uncharacterized protein Q1 colocalized with Q No genes
Uncharacterized protein UPF0344 No genes
Uncharacterized protein, homolog of B.subtilis yhgC No genes
Uroporphyrinogen III decarboxylase (EC 4.1.1.37) b3997 hemE N.D.
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) b3368 cysG +0.2
Uroporphyrinogen-III synthase (EC 4.2.1.75) b3804 hemD N.D.
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75) No genes
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75) No genes
transmembrane protein, distant homology with ydbS No genes
transmembrane protein, distant homology with ydbT No genes

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