SEED Subsystem: tRNA processing in Pseudomonas segetis P6

Experiments:

Role Gene Name Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) ACVTMO_RS08265 +0.0
  ACVTMO_RS08765 +0.3
Ribonuclease D (EC 3.1.26.3) ACVTMO_RS09125 rnd -1.8
Ribonuclease P protein component (EC 3.1.26.5) ACVTMO_RS01235 rnpA N.D.
Ribonuclease PH (EC 2.7.7.56) ACVTMO_RS00150 rph -1.0
Ribonuclease T (EC 3.1.13.-) ACVTMO_RS07155 rnt N.D.
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) ACVTMO_RS16985 truD +0.2
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) ACVTMO_RS15195 truA +0.3
  ACVTMO_RS16405 +0.3
tRNA pseudouridine synthase B (EC 4.2.1.70) ACVTMO_RS05965 truB -1.1
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase ACVTMO_RS05310 miaB -1.4
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) ACVTMO_RS07695 tadA N.D.
tRNAHis-5'-guanylyltransferase No genes

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Or view this subsystem at the SEED (slow)