SEED Subsystem: DNA-replication in Escherichia coli ECRC101

Experiments:

Role Gene Name WM_EV240  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) MCAODC_06055 recG -0.3
ATP-dependent DNA helicase RecQ MCAODC_04865 recQ +0.1
  MCAODC_07380 +0.1
  MCAODC_07385 +0.4
  MCAODC_07390 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA MCAODC_05520 dnaA N.D.
  MCAODC_12355 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) MCAODC_19140 ruvC N.D.
DNA polymerase I (EC 2.7.7.7) MCAODC_04650 polA N.D.
  MCAODC_10695 xni +0.3
DNA polymerase II (EC 2.7.7.7) MCAODC_01310 polB -0.2
DNA polymerase III alpha subunit (EC 2.7.7.7) MCAODC_00650 dnaE N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) MCAODC_05530 dnaN N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) MCAODC_02315 holC -0.4
DNA polymerase III delta prime subunit (EC 2.7.7.7) MCAODC_22905 holB N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) MCAODC_26555 holA N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) MCAODC_00480 dnaQ N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) MCAODC_01810 holD N.D.
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) MCAODC_27390 dnaX N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) MCAODC_19010 holE +0.4
DNA primase (EC 2.7.7.-) MCAODC_09175 dnaG N.D.
DNA primase (EC 2.7.7.-), phage-associated MCAODC_22415 +0.2
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN MCAODC_11670 recN -0.3
DNA replication protein DnaC MCAODC_01860 dnaC N.D.
  MCAODC_17510 dnaC +0.2
  MCAODC_24465 dnaC +0.1
DNA replication terminus site-binding protein MCAODC_17755 tus +0.2
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) MCAODC_10580 recD -1.5
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) MCAODC_10575 recB N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) MCAODC_10565 recC N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication MCAODC_04220 priA N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA MCAODC_19125 ruvA N.D.
Holliday junction DNA helicase RuvB MCAODC_19120 ruvB N.D.
Primosomal protein I MCAODC_01855 dnaT N.D.
  MCAODC_17180 +0.1
  MCAODC_17515 +0.6
  MCAODC_20125 eCs1768 N.D.
  MCAODC_21505 eCs1768 -0.1
  MCAODC_22745 eCs1768 +0.2
  MCAODC_24470 -0.2
Primosomal replication protein N MCAODC_02625 priB N.D.
Primosomal replication protein N prime prime MCAODC_27405 priC -0.1
RecA protein MCAODC_11230 recA -0.7
Recombination protein RecR MCAODC_27380 recR -0.1
Replicative DNA helicase (EC 3.6.1.-) MCAODC_03440 dnaB N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) MCAODC_10100 recJ -0.5
Transcription-repair coupling factor MCAODC_22830 mfd -2.0

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