SEED Subsystem: Bacterial RNA-metabolizing Zn-dependent hydrolases in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Paraquat dichloride 0.008 mg/ml  
⨯
Cell division protein FtsK PS417_16490 -1.0
  PS417_24170 +1.4
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) No genes
Ferric uptake regulation protein FUR PS417_24075 N.D.
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Metallo-beta-lactamase family protein, RNA-specific No genes
Peptide deformylase (EC 3.5.1.88) PS417_00095 N.D.
  PS417_22045 +0.2
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) PS417_23950 -1.3
Protein of unknown function DUF1447 No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) PS417_03300 -0.5
Transcriptional regulator in cluster with Zn-dependent hydrolase No genes
Trk system potassium uptake protein TrkA PS417_00080 -0.6
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 73 kDa analog No genes
cytochrome d ubiquinol oxidase, subunit II-related protein No genes

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